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Biochemistry screenshot
Biochemistry screenshot
Biochemistry screenshot
Biochemistry screenshot
Biochemistry screenshot
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Flashcard Decks
Curriculum

What You'll Learn

01 Introduction to Biochemistry
3 topics
1 Definition and Scope of Biochemistry
  • Historical Development of Biochemistry
  • Relationship to Other Sciences
  • Importance in Medicine and Biotechnology
2 Cellular Organization
  • Prokaryotic vs. Eukaryotic Cells
  • Subcellular Compartments and Organelles
  • Cell Membranes and Transport
3 Chemical Foundations
  • Atomic Structure and Chemical Bonding
  • Water and Biological Systems
  • Acid-Base Chemistry
  • Buffers and pH Regulation
02 Biomolecules I: Amino Acids and Proteins
5 topics
1 Amino Acids
  • Structure and Classification
  • Acid-Base Properties
  • Modified and Unusual Amino Acids
2 Peptide Bond Formation
  • Chemistry of Peptide Bonds
  • Oligopeptides and Polypeptides
3 Protein Structure
  • Primary Structure
  • Secondary Structure (α-helices, β-sheets)
  • Tertiary Structure and Protein Folding
  • Quaternary Structure
  • Protein Domains and Motifs
4 Protein Function
  • Structure-Function Relationships
  • Ligand Binding and Conformational Changes
  • Protein-Protein Interactions
5 Protein Purification and Analysis
  • Chromatography Techniques
  • Electrophoresis Methods
  • Mass Spectrometry
  • Protein Sequencing Methods
03 Biomolecules II: Carbohydrates
4 topics
1 Monosaccharides
  • Structure and Stereochemistry
  • Cyclic Forms and Mutarotation
  • Modified Monosaccharides
2 Disaccharides and Oligosaccharides
  • Glycosidic Bonds
  • Common Disaccharides (Lactose, Sucrose, Maltose)
  • Reducing vs. Non-reducing Sugars
3 Polysaccharides
  • Homopolysaccharides (Starch, Glycogen, Cellulose)
  • Heteropolysaccharides
  • Structural vs. Storage Polysaccharides
4 Glycoconjugates
  • Glycoproteins and Proteoglycans
  • Glycolipids
  • Biological Roles
04 Biomolecules III: Lipids
5 topics
1 Fatty Acids
  • Structure and Nomenclature
  • Saturated vs. Unsaturated Fatty Acids
  • Essential Fatty Acids
2 Triglycerides and Waxes
  • Structure and Properties
  • Storage Functions
3 Membrane Lipids
  • Phospholipids
  • Sphingolipids
  • Cholesterol and Steroids
  • Lipid Bilayers and Membranes
4 Lipoproteins
  • Structure and Classification
  • Roles in Lipid Transport
5 Eicosanoids and Other Lipid Messengers
  • Prostaglandins and Leukotrienes
  • Steroid Hormones
  • Fat-Soluble Vitamins
05 Biomolecules IV: Nucleic Acids
4 topics
1 Nucleotides and Nucleosides
  • Structure and Nomenclature
  • Purine and Pyrimidine Bases
  • Modified Nucleotides
2 DNA Structure
  • Primary Structure and Phosphodiester Bonds
  • Double Helix and Base Pairing
  • Alternative DNA Structures (Z-DNA, Triple Helix)
  • Supercoiling and Topoisomerases
3 RNA Structure
  • Types of RNA (mRNA, tRNA, rRNA)
  • Secondary and Tertiary RNA Structures
  • Catalytic RNA (Ribozymes)
4 Nucleic Acid-Protein Interactions
  • DNA-Binding Proteins
  • RNA-Binding Proteins
06 Enzymes
6 topics
1 Enzyme Classification and Nomenclature
  • Six Major Classes of Enzymes
  • Naming Conventions
2 Enzyme Kinetics
  • Michaelis-Menten Kinetics
  • Lineweaver-Burk and Other Plots
  • Multi-substrate Reactions
  • Turnover Number and Catalytic Efficiency
3 Enzyme Inhibition
  • Competitive Inhibition
  • Noncompetitive Inhibition
  • Uncompetitive Inhibition
  • Mixed Inhibition
  • Irreversible Inhibition
4 Enzyme Catalysis Mechanisms
  • Proximity and Orientation Effects
  • Acid-Base Catalysis
  • Covalent Catalysis
  • Metal Ion Catalysis
5 Regulation of Enzyme Activity
  • Allosteric Regulation
  • Covalent Modification
  • Zymogen Activation
  • Isozymes
6 Coenzymes and Cofactors
  • Metal Cofactors
  • Organic Cofactors
  • Vitamins as Coenzyme Precursors
07 Bioenergetics and Metabolism
3 topics
1 Principles of Bioenergetics
  • Laws of Thermodynamics
  • Free Energy and Spontaneity
  • High-Energy Compounds
  • Redox Reactions in Biochemistry
2 ATP and Energy Currency
  • ATP Structure and Hydrolysis
  • Other High-Energy Phosphates
  • Energy Coupling
3 Overview of Metabolism
  • Catabolic vs. Anabolic Pathways
  • Metabolic Integration
  • Metabolic Regulation
08 Carbohydrate Metabolism
5 topics
1 Glycolysis
  • Reactions and Enzymes
  • Energy Yield
  • Regulation
  • Anaerobic Fate of Pyruvate
2 Gluconeogenesis
  • Bypass Reactions
  • Precursors and Substrates
  • Regulation and Energy Cost
3 Pentose Phosphate Pathway
  • Oxidative Phase
  • Non-oxidative Phase
  • Metabolic Significance
4 Glycogen Metabolism
  • Glycogenesis
  • Glycogenolysis
  • Regulation by Hormones
  • Glycogen Storage Diseases
5 Alternative Carbohydrate Pathways
  • Fructose Metabolism
  • Galactose Metabolism
  • Amino Sugar Metabolism
09 Citric Acid Cycle and Oxidative Phosphorylation
5 topics
1 Pyruvate Dehydrogenase Complex
  • Structure and Components
  • Reaction Mechanism
  • Regulation
2 Citric Acid Cycle (TCA Cycle)
  • Reactions and Enzymes
  • Energy Yield
  • Regulation
  • Anaplerotic Reactions
3 Electron Transport Chain
  • Components and Organization
  • Electron Carriers
  • Proton Pumping
  • Inhibitors and Uncouplers
4 Oxidative Phosphorylation
  • Chemiosmotic Theory
  • ATP Synthase Structure and Mechanism
  • P/O Ratio and ATP Yield
5 Mitochondrial Transport Systems
  • Shuttles (Malate-Aspartate, Glycerol-3-Phosphate)
  • Metabolite Transporters
10 Lipid Metabolism
7 topics
1 Fatty Acid Oxidation
  • Activation and Transport
  • β-Oxidation Pathway
  • Energy Yield
  • Oxidation of Unsaturated Fatty Acids
  • α- and ω-Oxidation
2 Ketone Bodies
  • Synthesis
  • Utilization
  • Ketoacidosis
3 Fatty Acid Synthesis
  • Acetyl-CoA Carboxylase
  • Fatty Acid Synthase Complex
  • Elongation and Desaturation
  • Regulation
4 Triacylglycerol Metabolism
  • Synthesis
  • Lipolysis
  • Hormonal Regulation
5 Phospholipid Metabolism
  • Synthesis Pathways
  • Phospholipases
  • Phospholipid Remodeling
6 Cholesterol Metabolism
  • Biosynthesis
  • Regulation
  • Bile Acid Formation
  • Steroid Hormone Synthesis
7 Lipoprotein Metabolism
  • Structure and Classification
  • Metabolism and Transport
  • Dyslipidemias
11 Amino Acid Metabolism
5 topics
1 Protein Turnover
  • Protein Degradation Pathways
  • Ubiquitin-Proteasome System
  • Lysosomal Degradation
2 Amino Acid Degradation
  • Transamination and Deamination
  • Urea Cycle
  • Fate of Carbon Skeletons
  • One-Carbon Metabolism
3 Amino Acid Biosynthesis
  • Essential vs. Non-essential Amino Acids
  • Biosynthetic Families
  • Regulation
4 Amino Acid Derivatives
  • Neurotransmitters
  • Hormones
  • Other Physiological Compounds
5 Inborn Errors of Amino Acid Metabolism
  • Phenylketonuria
  • Maple Syrup Urine Disease
  • Other Disorders
12 Nucleotide Metabolism
5 topics
1 Purine Metabolism
  • De Novo Synthesis
  • Salvage Pathways
  • Degradation and Uric Acid Formation
2 Pyrimidine Metabolism
  • De Novo Synthesis
  • Salvage Pathways
  • Degradation
3 Deoxyribonucleotide Synthesis
  • Ribonucleotide Reduction
  • Thymidylate Synthesis
4 Nucleotide Metabolism Disorders
  • Gout
  • Lesch-Nyhan Syndrome
  • Other Disorders
5 Nucleotide Analogs in Medicine
  • Anticancer Agents
  • Antiviral Agents
13 Integration of Metabolism
5 topics
1 Metabolic Profiles of Major Organs
  • Liver
  • Muscle
  • Adipose Tissue
  • Brain
  • Kidney
2 Fed-Fasting Cycle
  • Postprandial State
  • Post-absorptive State
  • Starvation
3 Hormonal Regulation
  • Insulin and Glucagon
  • Epinephrine and Norepinephrine
  • Cortisol and Growth Hormone
4 Metabolic Adaptations
  • Exercise
  • Pregnancy and Lactation
  • Aging
5 Metabolic Disorders
  • Diabetes Mellitus
  • Metabolic Syndrome
  • Obesity
14 DNA Replication, Repair, and Recombination
4 topics
1 DNA Replication
  • Replication Fork
  • DNA Polymerases
  • Replication Initiation
  • Leading and Lagging Strand Synthesis
  • Replication Termination
  • Telomere Replication
2 DNA Damage
  • Types of DNA Damage
  • Mutagenic Agents
3 DNA Repair
  • Direct Repair
  • Base Excision Repair
  • Nucleotide Excision Repair
  • Mismatch Repair
  • Double-Strand Break Repair
4 DNA Recombination
  • Homologous Recombination
  • Site-Specific Recombination
  • Transposition
15 Transcription and RNA Processing
4 topics
1 Transcription in Prokaryotes
  • RNA Polymerase
  • Promoters and Initiation
  • Elongation and Termination
  • Transcriptional Regulation
2 Transcription in Eukaryotes
  • RNA Polymerases (I, II, III)
  • Promoters and Enhancers
  • Transcription Factors
  • Initiation, Elongation, and Termination
3 RNA Processing
  • 5' Capping
  • 3' Polyadenylation
  • RNA Splicing and Spliceosome
  • Alternative Splicing
  • RNA Editing
4 Non-coding RNAs
  • rRNA Processing
  • tRNA Processing
  • miRNAs and siRNAs
  • lncRNAs
16 Translation and Protein Processing
6 topics
1 Genetic Code
  • Codon-Anticodon Pairing
  • Degeneracy and Wobble
  • Variations in Different Organisms
2 tRNA and Aminoacyl-tRNA Synthetases
  • tRNA Structure
  • Charging of tRNAs
  • Specificity Mechanisms
3 Ribosome Structure
  • Prokaryotic vs. Eukaryotic Ribosomes
  • Ribosomal RNAs and Proteins
  • Functional Sites
4 Translation Process
  • Initiation
  • Elongation
  • Termination
  • Recycling
5 Post-translational Modifications
  • Proteolytic Processing
  • Glycosylation
  • Phosphorylation
  • Other Modifications
6 Protein Targeting and Sorting
  • Signal Sequences
  • Protein Translocation
  • Organelle-Specific Targeting
17 Regulation of Gene Expression
5 topics
1 Prokaryotic Gene Regulation
  • Operon Model
  • Positive and Negative Regulation
  • Catabolite Repression
  • Attenuation
2 Eukaryotic Transcriptional Regulation
  • Chromatin Structure and Remodeling
  • Histone Modifications
  • DNA Methylation
  • Transcription Factors and Coactivators
  • Enhancers and Silencers
3 Post-transcriptional Regulation
  • mRNA Stability
  • RNA Interference
  • Alternative Splicing Regulation
4 Translational Regulation
  • Initiation Factor Regulation
  • RNA-Binding Proteins
  • Upstream Open Reading Frames
5 Post-translational Regulation
  • Protein Degradation
  • Allosteric Regulation
  • Covalent Modifications
18 Signal Transduction
5 topics
1 Principles of Cell Signaling
  • Types of Signaling (Autocrine, Paracrine, Endocrine)
  • Signal Amplification and Integration
  • Desensitization and Adaptation
2 Receptors and their Mechanisms
  • G Protein-Coupled Receptors
  • Receptor Tyrosine Kinases
  • Ion Channel Receptors
  • Nuclear Receptors
3 Second Messengers
  • Cyclic AMP
  • Calcium
  • Inositol Phosphates
  • Diacylglycerol
4 Signal Transduction Pathways
  • MAP Kinase Pathways
  • JAK-STAT Pathway
  • PI3K-Akt Pathway
  • NF-κB Pathway
  • Wnt Signaling
  • Notch Signaling
5 Cross-talk Between Pathways
  • Scaffold Proteins
  • Compartmentalization
  • Integration of Signals
19 Molecular Basis of Human Diseases
5 topics
1 Genetic Disorders
  • Single Gene Disorders
  • Chromosomal Disorders
  • Multifactorial Inheritance
2 Metabolic Disorders
  • Inborn Errors of Metabolism
  • Acquired Metabolic Disorders
3 Cancer Biochemistry
  • Oncogenes and Tumor Suppressors
  • Cell Cycle Regulation
  • Apoptosis and Cancer
  • Metabolic Reprogramming in Cancer
  • Metastasis
4 Neurodegenerative Diseases
  • Protein Misfolding and Aggregation
  • Alzheimer's Disease
  • Parkinson's Disease
  • Huntington's Disease
5 Cardiovascular Diseases
  • Atherosclerosis
  • Lipid Metabolism Disorders
  • Hypertension
20 Biochemical Methods and Technologies
6 topics
1 Spectroscopic Methods
  • UV-Visible Spectroscopy
  • Fluorescence Spectroscopy
  • Circular Dichroism
  • Nuclear Magnetic Resonance
  • X-ray Crystallography
2 Separation Methods
  • Centrifugation
  • Chromatography Techniques
  • Electrophoresis
3 Molecular Biology Techniques
  • Polymerase Chain Reaction
  • DNA Sequencing
  • Cloning and Expression Systems
  • Gene Editing (CRISPR-Cas)
4 Proteomics
  • Mass Spectrometry
  • Protein Microarrays
  • Protein-Protein Interaction Analysis
5 Genomics and Transcriptomics
  • Next-Generation Sequencing
  • RNA-Seq
  • Bioinformatics Tools
6 Metabolomics
  • Metabolite Profiling
  • Flux Analysis
  • Metabolic Pathway Analysis
21 Biotechnology and Applied Biochemistry
6 topics
1 Recombinant DNA Technology
  • Vectors and Host Systems
  • Expression and Purification
  • Industrial Applications
2 Enzyme Technology
  • Enzyme Immobilization
  • Enzyme Engineering
  • Industrial Enzymes
3 Pharmaceutical Biochemistry
  • Drug Discovery
  • Pharmacokinetics and Pharmacodynamics
  • Protein Therapeutics
4 Medical Biotechnology
  • Vaccines
  • Monoclonal Antibodies
  • Gene Therapy
  • Stem Cell Technology
5 Agricultural Biotechnology
  • Genetically Modified Organisms
  • Plant Biochemistry
  • Biopesticides and Biofertilizers
6 Environmental Biochemistry
  • Bioremediation
  • Biodegradation
  • Renewable Energy Applications

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